IL_6GQB_028
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6GQB|1|1|A|933, 6GQB|1|1|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_028 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1812
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GQB|1|1|G|805
6GQB|1|1|A|806
6GQB|1|1|A|807
6GQB|1|1|A|808
6GQB|1|1|G|809
*
6GQB|1|1|C|931
6GQB|1|1|U|932
6GQB|1|1|A|933
6GQB|1|1|G|934
6GQB|1|1|U|935
6GQB|1|1|A|936
6GQB|1|1|G|937
6GQB|1|1|C|938
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain j
- 60S ribosomal protein L37-A
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