IL_6GQB_119

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6GQB|1|1|A|3142, 6GQB|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_119 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1986

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6GQB|1|1|C|3004
6GQB|1|1|A|3005
6GQB|1|1|A|3006
6GQB|1|1|U|3007
*
6GQB|1|1|A|3139
6GQB|1|1|G|3140
6GQB|1|1|A|3141
6GQB|1|1|A|3142
6GQB|1|1|C|3143
6GQB|1|1|G|3144

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A