IL_6GQB_121
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_121 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.1387
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6GQB|1|1|C|3018
6GQB|1|1|U|3019
6GQB|1|1|U|3020
6GQB|1|1|A|3021
6GQB|1|1|G|3022
6GQB|1|1|U|3023
6GQB|1|1|A|3024
6GQB|1|1|C|3025
*
6GQB|1|1|G|3030
6GQB|1|1|G|3031
6GQB|1|1|A|3032
6GQB|1|1|A|3033
6GQB|1|1|C|3034
6GQB|1|1|A|3035
6GQB|1|1|G|3036
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain AZ
- Elongation factor 2
- Chain B
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L9-A
- Chain V
- 60S ribosomal protein L23-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
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