IL_6GQB_139
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUA*UUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 6GQB|1|1|G|3377
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_139 not in the Motif Atlas
- Homologous match to IL_8C3A_138
- Geometric discrepancy: 0.1641
- The information below is about IL_8C3A_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84428.1
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6GQB|1|1|G|3328
6GQB|1|1|U|3329
6GQB|1|1|A|3330
*
6GQB|1|1|U|3373
6GQB|1|1|U|3374
6GQB|1|1|A|3375
6GQB|1|1|A|3376
6GQB|1|1|G|3377
6GQB|1|1|C|3378
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain W
- 60S ribosomal protein L24-A
- Chain d
- 60S ribosomal protein L31-A
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