IL_6GQB_174
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6GQB|1|2|A|579, 6GQB|1|2|U|581, 6GQB|1|2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_174 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.2029
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GQB|1|2|G|562
6GQB|1|2|U|563
6GQB|1|2|G|564
6GQB|1|2|C|565
6GQB|1|2|C|566
6GQB|1|2|A|567
6GQB|1|2|G|568
*
6GQB|1|2|C|575
6GQB|1|2|G|576
6GQB|1|2|G|577
6GQB|1|2|U|578
6GQB|1|2|A|579
6GQB|1|2|A|580
6GQB|1|2|U|581
6GQB|1|2|U|582
6GQB|1|2|C|583
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AN
- 40S ribosomal protein S23-A
- Chain AU
- 40S ribosomal protein S30-A
- Chain AZ
- Elongation factor 2
- Chain t
- 40S ribosomal protein S3
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