IL_6GQB_201

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6GQB|1|2|C|1158, 6GQB|1|2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_201 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1919

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6GQB|1|2|A|1157
6GQB|1|2|C|1158
6GQB|1|2|C|1159
6GQB|1|2|A|1160
*
6GQB|1|2|U|1617
6GQB|1|2|C|1618
6GQB|1|2|C|1619
6GQB|1|2|C|1620
6GQB|1|2|U|1621

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AK

40S ribosomal protein S20

Chain AS

40S ribosomal protein S28-A

Chain AX

Transfer RNA; tRNA

Chain v

40S ribosomal protein S5