IL_6GZ4_063
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6GZ4|1|A2|A|1632, 6GZ4|1|A2|G|1636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ4_063 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1714
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GZ4|1|A2|G|1504
6GZ4|1|A2|A|1505
6GZ4|1|A2|A|1506
6GZ4|1|A2|A|1507
6GZ4|1|A2|G|1508
*
6GZ4|1|A2|C|1630
6GZ4|1|A2|U|1631
6GZ4|1|A2|A|1632
6GZ4|1|A2|G|1633
6GZ4|1|A2|U|1634
6GZ4|1|A2|A|1635
6GZ4|1|A2|G|1636
6GZ4|1|A2|C|1637
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AC
- ribosomal protein uL4
- Chain AL
- ribosomal protein eL13
- Chain AN
- ribosomal protein eL15
- Chain Aa
- ribosomal protein uL15
- Chain Aj
- ribosomal protein eL37
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