IL_6GZ4_084

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_084 not in the Motif Atlas

Homologous match to IL_8C3A_052

Geometric discrepancy: 0.334

The information below is about IL_8C3A_052

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_84902.1

Basepair signature

cWW-L-cWW-L-L-R-cHH

Number of instances in this motif group

2

Unit IDs

6GZ4|1|A2|C|1892
6GZ4|1|A2|G|1893
6GZ4|1|A2|C|1894
6GZ4|1|A2|C|1895
6GZ4|1|A2|C|1896
6GZ4|1|A2|G|1897
6GZ4|1|A2|A|1898
6GZ4|1|A2|U|1899
*
6GZ4|1|A2|G|2045
6GZ4|1|A2|G|2046

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

ribosomal protein uL30

Chain AO

ribosomal protein uL13

Chain AS

ribosomal protein eL20

Chain Af

ribosomal protein eL33