IL_6GZ4_099

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_099 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1055

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6GZ4|1|A2|G|2337
6GZ4|1|A2|U|2338
6GZ4|1|A2|A|2339
6GZ4|1|A2|G|2340
6GZ4|1|A2|U|2341
6GZ4|1|A2|A|2342
6GZ4|1|A2|G|2343
*
6GZ4|1|A2|C|3829
6GZ4|1|A2|G|3830
6GZ4|1|A2|A|3831
6GZ4|1|A2|A|3832
6GZ4|1|A2|A|3833
6GZ4|1|A2|C|3834

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AP

ribosomal protein uL22