IL_6GZ4_124

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

6GZ4|1|A2|A|3682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_124 not in the Motif Atlas

Homologous match to IL_9PN5_084

Geometric discrepancy: 0.5987

The information below is about IL_9PN5_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.3

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6GZ4|1|A2|C|3679
6GZ4|1|A2|U|3680
6GZ4|1|A2|G|3681
6GZ4|1|A2|A|3682
6GZ4|1|A2|A|3683
6GZ4|1|A2|U|3684
6GZ4|1|A2|G|3685
*
6GZ4|1|A2|C|3710
6GZ4|1|A2|G|3711
6GZ4|1|A2|C|3712
6GZ4|1|A2|G|3713

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bw

Transfer RNA; tRNA