IL_6GZ4_160

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_160 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.1536

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6GZ4|1|A2|C|4558
6GZ4|1|A2|U|4559
6GZ4|1|A2|C|4560
6GZ4|1|A2|A|4561
6GZ4|1|A2|G|4562
6GZ4|1|A2|U|4563
6GZ4|1|A2|A|4564
6GZ4|1|A2|C|4565
*
6GZ4|1|A2|G|4570
6GZ4|1|A2|G|4571
6GZ4|1|A2|A|4572
6GZ4|1|A2|A|4573
6GZ4|1|A2|C|4574
6GZ4|1|A2|C|4575
6GZ4|1|A2|G|4576

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AH

ribosomal protein uL6

Chain AV

ribosomal protein uL14

Chain Ct

eukaryotic elongation factor 2 (eEF2)