IL_6GZ4_175

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6GZ4|1|A2|G|5007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_175 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1884

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6GZ4|1|A2|G|4958
6GZ4|1|A2|U|4959
6GZ4|1|A2|U|4960
*
6GZ4|1|A2|G|5003
6GZ4|1|A2|U|5004
6GZ4|1|A2|C|5005
6GZ4|1|A2|A|5006
6GZ4|1|A2|G|5007
6GZ4|1|A2|C|5008

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain Ad

ribosomal protein eL31