IL_6GZ4_200

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6GZ4|1|B1|U|305, 6GZ4|1|B1|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_200 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3799

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6GZ4|1|B1|C|216
6GZ4|1|B1|A|217
6GZ4|1|B1|U|218
6GZ4|1|B1|U|219
*
6GZ4|1|B1|A|302
6GZ4|1|B1|C|303
6GZ4|1|B1|C|304
6GZ4|1|B1|U|305
6GZ4|1|B1|C|306
6GZ4|1|B1|G|307
6GZ4|1|B1|G|308
6GZ4|1|B1|G|309

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BI

ribosomal protein eS8