IL_6GZ4_215

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6GZ4|1|B1|A|628, 6GZ4|1|B1|U|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_215 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1819

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6GZ4|1|B1|G|611
6GZ4|1|B1|U|612
6GZ4|1|B1|G|613
6GZ4|1|B1|C|614
6GZ4|1|B1|C|615
6GZ4|1|B1|A|616
6GZ4|1|B1|G|617
*
6GZ4|1|B1|C|624
6GZ4|1|B1|G|625
6GZ4|1|B1|G|626
6GZ4|1|B1|U|627
6GZ4|1|B1|A|628
6GZ4|1|B1|A|629
6GZ4|1|B1|U|630
6GZ4|1|B1|U|631
6GZ4|1|B1|C|632

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BD

ribosomal protein uS3

Chain BX

ribosomal protein uS12

Chain Be

ribosomal protein eS30

Chain Bx

mRNA

Chain Ct

eukaryotic elongation factor 2 (eEF2)