IL_6GZ4_217

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6GZ4|1|B1|A|668, 6GZ4|1|B1|A|669, 6GZ4|1|B1|A|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_217 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1774

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6GZ4|1|B1|G|665
6GZ4|1|B1|U|666
6GZ4|1|B1|U|667
6GZ4|1|B1|A|668
6GZ4|1|B1|A|669
6GZ4|1|B1|A|670
6GZ4|1|B1|A|671
*
6GZ4|1|B1|U|1161
6GZ4|1|B1|C|1162

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BX

ribosomal protein uS12

Chain Ba

ribosomal protein eS26