IL_6GZ4_229

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_229 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1415

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6GZ4|1|B1|G|942
6GZ4|1|B1|U|943
6GZ4|1|B1|A|944
6GZ4|1|B1|U|945
*
6GZ4|1|B1|A|981
6GZ4|1|B1|G|982
6GZ4|1|B1|A|983
6GZ4|1|B1|C|984

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain BB

ribosomal protein eS1

Chain BO

ribosomal protein uS11