IL_6GZK_012

3D structure

PDB id

6GZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZK_012 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1884

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6GZK|8|A|G|5
6GZK|8|A|A|6
*
6GZK|8|A|U|42
6GZK|8|A|A|43
6GZK|8|A|C|44

Current chains

Chain A

TMR3 (48-MER)

Nearby chains