IL_6GZX_085

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6GZX|1|A2|U|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_085 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.3885

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

6GZX|1|A2|C|1255
6GZX|1|A2|G|1256
6GZX|1|A2|A|1257
6GZX|1|A2|U|1258
6GZX|1|A2|G|1259
6GZX|1|A2|A|1260
6GZX|1|A2|A|1261
6GZX|1|A2|G|1262
*
6GZX|1|A2|U|1282
6GZX|1|A2|G|1283
6GZX|1|A2|G|1284
6GZX|1|A2|A|1285
6GZX|1|A2|G|1286

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain P2

50S ribosomal protein L20