IL_6GZX_099

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GAGAACC*GGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_099 not in the Motif Atlas

Geometric match to IL_5TBW_074

Geometric discrepancy: 0.3406

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6GZX|1|A2|G|1700
6GZX|1|A2|A|1701
6GZX|1|A2|G|1702
6GZX|1|A2|A|1703
6GZX|1|A2|A|1704
6GZX|1|A2|C|1705
6GZX|1|A2|C|1706
*
6GZX|1|A2|G|2027
6GZX|1|A2|G|2028
6GZX|1|A2|A|2029
6GZX|1|A2|C|2030

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain M2

50S ribosomal protein L17