IL_6GZX_102

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6GZX|1|A2|G|1748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_102 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.2359

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6GZX|1|A2|C|1735
6GZX|1|A2|G|1736
6GZX|1|A2|U|1737
6GZX|1|A2|A|1738
6GZX|1|A2|A|1739
6GZX|1|A2|C|1740
*
6GZX|1|A2|G|1745
6GZX|1|A2|G|1746
6GZX|1|A2|A|1747
6GZX|1|A2|G|1748
6GZX|1|A2|A|1749
6GZX|1|A2|A|1750
6GZX|1|A2|G|1751

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2