IL_6GZX_109

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6GZX|1|A2|A|1962, 6GZX|1|A2|U|1968, 6GZX|1|A2|U|1987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_109 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.2302

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6GZX|1|A2|C|1958
6GZX|1|A2|G|1959
6GZX|1|A2|A|1960
6GZX|1|A2|A|1961
6GZX|1|A2|A|1962
6GZX|1|A2|U|1963
6GZX|1|A2|U|1964
6GZX|1|A2|C|1965
6GZX|1|A2|C|1966
6GZX|1|A2|U|1967
6GZX|1|A2|U|1968
6GZX|1|A2|G|1969
*
6GZX|1|A2|C|1985
6GZX|1|A2|C|1986
6GZX|1|A2|U|1987
6GZX|1|A2|G|1988

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2