IL_6GZX_261
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZX_261 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.2242
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6GZX|1|A4|U|563
6GZX|1|A4|G|564
6GZX|1|A4|U|565
6GZX|1|A4|A|566
6GZX|1|A4|G|567
*
6GZX|1|A4|U|740
6GZX|1|A4|G|741
6GZX|1|A4|A|742
6GZX|1|A4|G|743
6GZX|1|A4|G|744
Current chains
- Chain A4
- 16S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L4
- 30S ribosomal protein S12
- Chain O4
- 30S ribosomal protein S15
- Chain Q4
- 30S ribosomal protein S17
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