IL_6GZX_268

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

6GZX|1|A1|G|99

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_268 not in the Motif Atlas

Homologous match to IL_7A0S_004

Geometric discrepancy: 0.3421

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6GZX|1|A1|G|80
6GZX|1|A1|G|81
6GZX|1|A1|G|82
6GZX|1|A1|A|83
6GZX|1|A1|G|84
*
6GZX|1|A1|C|96
6GZX|1|A1|G|97
6GZX|1|A1|U|98
6GZX|1|A1|G|99
6GZX|1|A1|G|100
6GZX|1|A1|A|101
6GZX|1|A1|U|102
6GZX|1|A1|C|103

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain T1

50S ribosomal protein L24

Chain X1

50S ribosomal protein L29