IL_6GZZ_025

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6GZZ|1|A1|A|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_025 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.204

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6GZZ|1|A1|C|1046
6GZZ|1|A1|U|1047
6GZZ|1|A1|A|1048
6GZZ|1|A1|A|1049
6GZZ|1|A1|G|1050
*
6GZZ|1|A1|C|1201
6GZZ|1|A1|G|1202
6GZZ|1|A1|A|1203
6GZZ|1|A1|A|1204
6GZZ|1|A1|G|1205

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain P1

50S ribosomal protein L20

Chain Q1

50S ribosomal protein L21

Chain Y1

50S ribosomal protein L30