IL_6GZZ_129

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6GZZ|1|A2|A|1962, 6GZZ|1|A2|U|1968, 6GZZ|1|A2|U|1987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_129 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.2366

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A2|C|1958
6GZZ|1|A2|G|1959
6GZZ|1|A2|A|1960
6GZZ|1|A2|A|1961
6GZZ|1|A2|A|1962
6GZZ|1|A2|U|1963
6GZZ|1|A2|U|1964
6GZZ|1|A2|C|1965
6GZZ|1|A2|C|1966
6GZZ|1|A2|U|1967
6GZZ|1|A2|U|1968
6GZZ|1|A2|G|1969
*
6GZZ|1|A2|C|1985
6GZZ|1|A2|C|1986
6GZZ|1|A2|U|1987
6GZZ|1|A2|G|1988

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA