IL_6GZZ_131

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUGGAG*UUACCCCG

Length

15 nucleotides

Bulged bases

6GZZ|1|A2|U|2092, 6GZZ|1|A2|A|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_131 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3974

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A2|C|2090
6GZZ|1|A2|G|2091
6GZZ|1|A2|U|2092
6GZZ|1|A2|G|2093
6GZZ|1|A2|G|2094
6GZZ|1|A2|A|2095
6GZZ|1|A2|G|2096
*
6GZZ|1|A2|U|2451
6GZZ|1|A2|U|2452
6GZZ|1|A2|A|2453
6GZZ|1|A2|C|2454
6GZZ|1|A2|C|2455
6GZZ|1|A2|C|2456
6GZZ|1|A2|C|2457
6GZZ|1|A2|G|2458

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain E2

50S ribosomal protein L4

Chain K2

50S ribosomal protein L15