IL_6GZZ_167

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6GZZ|1|A3|G|513, 6GZZ|1|A3|A|515, 6GZZ|1|A3|U|517, 6GZZ|1|A3|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_167 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.3828

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A3|G|498
6GZZ|1|A3|U|499
6GZZ|1|A3|G|500
6GZZ|1|A3|C|501
6GZZ|1|A3|C|502
6GZZ|1|A3|A|503
6GZZ|1|A3|G|504
*
6GZZ|1|A3|C|511
6GZZ|1|A3|G|512
6GZZ|1|A3|G|513
6GZZ|1|A3|U|514
6GZZ|1|A3|A|515
6GZZ|1|A3|A|516
6GZZ|1|A3|U|517
6GZZ|1|A3|A|518
6GZZ|1|A3|C|519

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain C3

30S ribosomal protein S3

Chain L3

30S ribosomal protein S12

Chain V3

Ribosome hibernation promoting factor