IL_6GZZ_188

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUCGC*GCGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_188 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3468

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GZZ|1|A3|G|1417
6GZZ|1|A3|U|1418
6GZZ|1|A3|C|1419
6GZZ|1|A3|G|1420
6GZZ|1|A3|C|1421
*
6GZZ|1|A3|G|1439
6GZZ|1|A3|C|1440
6GZZ|1|A3|G|1441
6GZZ|1|A3|C|1442
6GZZ|1|A3|C|1443

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain O1

50S ribosomal protein L19

Chain T3

30S ribosomal protein S20