IL_6GZZ_197

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCAAUG*UGAC

Length

10 nucleotides

Bulged bases

6GZZ|1|A4|G|383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_197 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3542

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A4|G|366
6GZZ|1|A4|C|367
6GZZ|1|A4|A|368
6GZZ|1|A4|A|369
6GZZ|1|A4|U|370
6GZZ|1|A4|G|371
*
6GZZ|1|A4|U|382
6GZZ|1|A4|G|383
6GZZ|1|A4|A|384
6GZZ|1|A4|C|385

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain P4

30S ribosomal protein S16