IL_6GZZ_237
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- CCUCUG*CAUG
- Length
- 10 nucleotides
- Bulged bases
- 6GZZ|1|A1|U|2741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZZ_237 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3851
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6GZZ|1|A1|C|2694
6GZZ|1|A1|C|2695
6GZZ|1|A1|U|2696
6GZZ|1|A1|C|2697
6GZZ|1|A1|U|2698
6GZZ|1|A1|G|2699
*
6GZZ|1|A1|C|2739
6GZZ|1|A1|A|2740
6GZZ|1|A1|U|2741
6GZZ|1|A1|G|2742
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L3
- Chain J1
- 50S ribosomal protein L14
- Chain M1
- 50S ribosomal protein L17
- Chain O1
- 50S ribosomal protein L19
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