IL_6GZZ_335

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

6GZZ|1|A2|U|2741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_335 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.3035

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6GZZ|1|A2|C|2694
6GZZ|1|A2|C|2695
6GZZ|1|A2|U|2696
6GZZ|1|A2|C|2697
6GZZ|1|A2|U|2698
*
6GZZ|1|A2|A|2740
6GZZ|1|A2|U|2741
6GZZ|1|A2|G|2742

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain J2

50S ribosomal protein L14

Chain O2

50S ribosomal protein L19