IL_6H58_149

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6H58|1|AA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_149 not in the Motif Atlas

Geometric match to IL_5TBW_054

Geometric discrepancy: 0.1695

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6H58|1|AA|C|1043
6H58|1|AA|C|1044
6H58|1|AA|C|1045
6H58|1|AA|A|1046
6H58|1|AA|G|1047
6H58|1|AA|A|1048
6H58|1|AA|C|1049
6H58|1|AA|A|1050
6H58|1|AA|G|1051
*
6H58|1|AA|U|1108
6H58|1|AA|C|1109
6H58|1|AA|G|1110
6H58|1|AA|A|1111
6H58|1|AA|G|1112

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain 44

50S ribosomal protein L36

Chain GG

50S ribosomal protein L6