IL_6H58_321

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6H58|1|aa|A|532, 6H58|1|aa|U|534

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_321 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1331

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6H58|1|aa|G|515
6H58|1|aa|U|516
6H58|1|aa|G|517
6H58|1|aa|C|518
6H58|1|aa|C|519
6H58|1|aa|A|520
6H58|1|aa|G|521
*
6H58|1|aa|C|528
6H58|1|aa|G|529
6H58|1|aa|G|530
6H58|1|aa|U|531
6H58|1|aa|A|532
6H58|1|aa|A|533
6H58|1|aa|U|534
6H58|1|aa|A|535
6H58|1|aa|C|536

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain cc

30S ribosomal protein S3

Chain dd

30S ribosomal protein S4

Chain ll

30S ribosomal protein S12

Chain xx

Ribosome hibernation promoting factor