IL_6H58_331

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6H58|1|aa|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_331 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0967

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6H58|1|aa|U|684
6H58|1|aa|G|685
6H58|1|aa|U|686
6H58|1|aa|A|687
6H58|1|aa|G|688
*
6H58|1|aa|C|699
6H58|1|aa|G|700
6H58|1|aa|U|701
6H58|1|aa|A|702
6H58|1|aa|G|703
6H58|1|aa|A|704
6H58|1|aa|G|705
6H58|1|aa|A|706

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain kk

30S ribosomal protein S11