IL_6HA1_077
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 6HA1|1|A|A|1967, 6HA1|1|A|U|1973, 6HA1|1|A|C|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HA1_077 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.0938
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
6HA1|1|A|C|1963
6HA1|1|A|G|1964
6HA1|1|A|A|1965
6HA1|1|A|A|1966
6HA1|1|A|A|1967
6HA1|1|A|U|1968
6HA1|1|A|U|1969
6HA1|1|A|C|1970
6HA1|1|A|C|1971
6HA1|1|A|U|1972
6HA1|1|A|U|1973
6HA1|1|A|G|1974
*
6HA1|1|A|C|1990
6HA1|1|A|C|1991
6HA1|1|A|C|1992
6HA1|1|A|G|1993
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: