IL_6HA1_086

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGGAAA*UGGAG

Length

13 nucleotides

Bulged bases

6HA1|1|A|G|2161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_086 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.3092

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

6HA1|1|A|C|2158
6HA1|1|A|U|2159
6HA1|1|A|U|2160
6HA1|1|A|G|2161
6HA1|1|A|G|2162
6HA1|1|A|A|2163
6HA1|1|A|A|2164
6HA1|1|A|A|2165
*
6HA1|1|A|U|2184
6HA1|1|A|G|2185
6HA1|1|A|G|2186
6HA1|1|A|A|2187
6HA1|1|A|G|2188

Current chains

Chain A

23S ribosomal RNA

Nearby chains