IL_6HCF_064
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 6HCF|1|52|U|1930, 6HCF|1|52|C|1931, 6HCF|1|52|G|2055, 6HCF|1|52|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_064 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.3469
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6HCF|1|52|C|1926
6HCF|1|52|U|1927
6HCF|1|52|C|1928
6HCF|1|52|A|1929
6HCF|1|52|U|1930
6HCF|1|52|C|1931
6HCF|1|52|A|1932
6HCF|1|52|G|1933
*
6HCF|1|52|C|2053
6HCF|1|52|U|2054
6HCF|1|52|G|2055
6HCF|1|52|G|2056
6HCF|1|52|A|2057
6HCF|1|52|G|2058
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain H3
- uL6
- Chain M3
- Ribosomal protein L14
- Chain O3
- uL13
- Chain S3
- eL20
- Chain m3
- eL40
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