IL_6HCF_082
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGGAAUG*CGAGAGAG
- Length
- 16 nucleotides
- Bulged bases
- 6HCF|1|52|U|2661, 6HCF|1|52|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_082 not in the Motif Atlas
- Geometric match to IL_5TBW_073
- Geometric discrepancy: 0.2905
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6HCF|1|52|C|2655
6HCF|1|52|U|2656
6HCF|1|52|G|2657
6HCF|1|52|G|2658
6HCF|1|52|A|2659
6HCF|1|52|A|2660
6HCF|1|52|U|2661
6HCF|1|52|G|2662
*
6HCF|1|52|C|2672
6HCF|1|52|G|2673
6HCF|1|52|A|2674
6HCF|1|52|G|2675
6HCF|1|52|A|2676
6HCF|1|52|G|2677
6HCF|1|52|A|2678
6HCF|1|52|G|2679
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain O1
- uS15
- Chain R3
- eL19
- Chain Z3
- 60S ribosomal protein L27
- Chain c3
- eL30
- Chain g3
- eL34
- Chain p3
- eL43
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