IL_6HCF_123
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_123 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1779
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6HCF|1|52|C|4596
6HCF|1|52|U|4597
6HCF|1|52|C|4598
6HCF|1|52|A|4599
6HCF|1|52|G|4600
6HCF|1|52|U|4601
6HCF|1|52|A|4602
6HCF|1|52|C|4603
*
6HCF|1|52|G|4608
6HCF|1|52|G|4609
6HCF|1|52|A|4610
6HCF|1|52|A|4611
6HCF|1|52|C|4612
6HCF|1|52|C|4613
6HCF|1|52|G|4614
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain B3
- uL3
- Chain H3
- uL6
- Chain V3
- Ribosomal protein L23
- Chain k1
- ATP binding cassette subfamily E member 1
- Chain m3
- eL40
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