IL_6HCF_162
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 6HCF|1|A1|U|361, 6HCF|1|A1|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_162 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1819
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6HCF|1|A1|U|359
6HCF|1|A1|A|360
6HCF|1|A1|U|361
6HCF|1|A1|C|362
6HCF|1|A1|A|363
6HCF|1|A1|A|364
*
6HCF|1|A1|U|396
6HCF|1|A1|G|397
6HCF|1|A1|A|398
6HCF|1|A1|C|399
6HCF|1|A1|C|400
6HCF|1|A1|A|401
6HCF|1|A1|C|402
6HCF|1|A1|G|403
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain J1
- eS8
- Chain M1
- Ribosomal protein S11
- Chain Y1
- uS12
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