IL_6HCF_168

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

6HCF|1|A1|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_168 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1988

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6HCF|1|A1|C|491
6HCF|1|A1|C|492
6HCF|1|A1|A|493
6HCF|1|A1|C|494
6HCF|1|A1|U|495
6HCF|1|A1|C|496
*
6HCF|1|A1|G|506
6HCF|1|A1|G|507
6HCF|1|A1|A|508
6HCF|1|A1|G|509

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Z1

eS24