IL_6HCF_176

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_176 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2486

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6HCF|1|A1|G|665
6HCF|1|A1|U|666
6HCF|1|A1|U|667
6HCF|1|A1|A|668
6HCF|1|A1|A|669
6HCF|1|A1|A|670
6HCF|1|A1|A|671
*
6HCF|1|A1|U|1161
6HCF|1|A1|C|1162

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Y1

uS12

Chain b1

eS26