IL_6HCF_196

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAGUAUG*UGAAACU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_196 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3596

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6HCF|1|A1|G|1167
6HCF|1|A1|G|1168
6HCF|1|A1|G|1169
6HCF|1|A1|A|1170
6HCF|1|A1|G|1171
6HCF|1|A1|U|1172
6HCF|1|A1|A|1173
6HCF|1|A1|U|1174
6HCF|1|A1|G|1175
*
6HCF|1|A1|U|1186
6HCF|1|A1|G|1187
6HCF|1|A1|A|1188
6HCF|1|A1|A|1189
6HCF|1|A1|A|1190
6HCF|1|A1|C|1191
6HCF|1|A1|U|1192

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Y1

uS12

Chain n3

eL41