IL_6HCF_241

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGC*GGUCC

Length

9 nucleotides

Bulged bases

6HCF|1|52|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_241 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.231

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6HCF|1|52|G|1548
6HCF|1|52|G|1549
6HCF|1|52|G|1550
6HCF|1|52|C|1551
*
6HCF|1|52|G|1576
6HCF|1|52|G|1577
6HCF|1|52|U|1578
6HCF|1|52|C|1579
6HCF|1|52|C|1580

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain R3

eL19

Chain p3

eL43