IL_6HCF_256

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUCC*GAGAU

Length

9 nucleotides

Bulged bases

6HCF|1|52|A|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_256 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2632

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6HCF|1|52|A|3630
6HCF|1|52|U|3631
6HCF|1|52|C|3632
6HCF|1|52|C|3633
*
6HCF|1|52|G|3827
6HCF|1|52|A|3828
6HCF|1|52|G|3829
6HCF|1|52|A|3830
6HCF|1|52|U|3831

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain n3

eL41