IL_6HCF_321
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6HCF|1|52|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_321 not in the Motif Atlas
- Homologous match to IL_8CRE_043
- Geometric discrepancy: 0.207
- The information below is about IL_8CRE_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6HCF|1|52|G|1739
6HCF|1|52|C|1740
6HCF|1|52|G|1741
6HCF|1|52|A|1742
6HCF|1|52|A|1743
6HCF|1|52|U|1744
*
6HCF|1|52|A|1786
6HCF|1|52|A|1787
6HCF|1|52|A|1788
6HCF|1|52|C|1789
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 72
- 5S ribosomal RNA; 5S rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain I3
- 60S ribosomal protein L10
- Chain T3
- eL21
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