IL_6HCJ_003
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_003 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1991
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HCJ|1|51|C|81
6HCJ|1|51|U|82
6HCJ|1|51|C|83
6HCJ|1|51|A|84
6HCJ|1|51|G|85
6HCJ|1|51|U|86
6HCJ|1|51|A|87
6HCJ|1|51|A|88
*
6HCJ|1|51|U|96
6HCJ|1|51|G|97
6HCJ|1|51|A|98
6HCJ|1|51|A|99
6HCJ|1|51|C|100
6HCJ|1|51|A|101
6HCJ|1|51|G|102
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain a3
- uL15
Coloring options: