IL_6HCJ_022

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGGUCCG*CGGCC

Length

13 nucleotides

Bulged bases

6HCJ|1|51|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_022 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.3806

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HCJ|1|51|G|481
6HCJ|1|51|C|481|||A
6HCJ|1|51|G|482
6HCJ|1|51|G|483
6HCJ|1|51|U|484
6HCJ|1|51|C|485
6HCJ|1|51|C|486
6HCJ|1|51|G|487
*
6HCJ|1|51|C|669
6HCJ|1|51|G|670
6HCJ|1|51|G|671
6HCJ|1|51|C|672
6HCJ|1|51|C|673

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain r3

eL28