IL_6HCJ_071

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAGUAG*CGAAACC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_071 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2457

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6HCJ|1|51|G|2357
6HCJ|1|51|G|2358
6HCJ|1|51|U|2359
6HCJ|1|51|A|2360
6HCJ|1|51|G|2361
6HCJ|1|51|U|2362
6HCJ|1|51|A|2363
6HCJ|1|51|G|2364
*
6HCJ|1|51|C|3858
6HCJ|1|51|G|3859
6HCJ|1|51|A|3860
6HCJ|1|51|A|3861
6HCJ|1|51|A|3862
6HCJ|1|51|C|3863
6HCJ|1|51|C|3864

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain P3

uL22