IL_6HCJ_134
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUGG*CCUGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_134 not in the Motif Atlas
- Geometric match to IL_4WF9_084
- Geometric discrepancy: 0.365
- The information below is about IL_4WF9_084
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6HCJ|1|71|C|78
6HCJ|1|71|U|79
6HCJ|1|71|U|80
6HCJ|1|71|G|81
6HCJ|1|71|G|82
*
6HCJ|1|71|C|94
6HCJ|1|71|C|95
6HCJ|1|71|U|96
6HCJ|1|71|G|97
6HCJ|1|71|G|98
Current chains
- Chain 71
- 5S ribosomal RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain F3
- uL30
- Chain I3
- 60S ribosomal protein L10
- Chain S3
- eL20
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